X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2FWSClient.java;h=e883ea465bf9976d8d9df0a479e0665e1ae42033;hb=506d60f0e188723ddc91c26824b41ac7034df3fe;hp=91fd4b0e704be0551ea36483e38f70b5cb91c6dc;hpb=08bde8d252a69d4d6a3b2497f759bd5d6f154a3f;p=jalview.git

diff --git a/src/jalview/ws/WSClient.java b/src/jalview/ws/WSClient.java
index 91fd4b0..e883ea4 100755
--- a/src/jalview/ws/WSClient.java
+++ b/src/jalview/ws/WSClient.java
@@ -1,17 +1,17 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
+ * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * 
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
  * as published by the Free Software Foundation; either version 2
  * of the License, or (at your option) any later version.
- *
+ * 
  * This program is distributed in the hope that it will be useful,
  * but WITHOUT ANY WARRANTY; without even the implied warranty of
  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  * GNU General Public License for more details.
- *
+ * 
  * You should have received a copy of the GNU General Public License
  * along with this program; if not, write to the Free Software
  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
@@ -26,33 +26,41 @@ import jalview.gui.*;
 public abstract class WSClient
 {
   /**
-   * WSClient holds the basic attributes that are displayed to the user
-   * for all jalview web service clients
+   * WSClient holds the basic attributes that are displayed to the user for all
+   * jalview web service clients
    */
   /**
    * displayed name for this web service
    */
   protected String WebServiceName;
+
   /**
-   * specific job title (e.g. 'ClustalW Alignment of Selection from Aligment from Cut and Paste input')
+   * specific job title (e.g. 'ClustalW Alignment of Selection from Aligment
+   * from Cut and Paste input')
    */
   protected String WebServiceJobTitle;
+
   /**
-   * String giving additional information such as method citations for this service 
+   * String giving additional information such as method citations for this
+   * service
    */
   protected String WebServiceReference;
+
   /**
    * Service endpoint
    */
   protected String WsURL;
+
   /**
    * Web service information used to initialise the WSClient attributes
    */
   protected WebserviceInfo wsInfo;
+
   /**
-   * total number of jobs managed by this web service client instance. 
+   * total number of jobs managed by this web service client instance.
    */
   int jobsRunning = 0;
+
   /**
    * TODO: this is really service metadata, and should be moved elsewhere.
    * mappings between abstract interface names and menu entries
@@ -63,11 +71,14 @@ public abstract class WSClient
     ServiceActions.put("MsaWS", "Multiple Sequence Alignment");
     ServiceActions.put("SecStrPred", "Secondary Structure Prediction");
   };
+
   public WSClient()
   {
   }
+
   /**
    * initialise WSClient service information attributes from the service handle
+   * 
    * @param sh
    * @return the service instance information GUI for this client and job.
    */
@@ -75,23 +86,29 @@ public abstract class WSClient
   {
     return setWebService(sh, false);
   }
+
   /**
    * original service handle that this client was derived from
    */
-  ServiceHandle serviceHandle=null;
-    /**
-     * initialise WSClient service information attributes from the service handle
-     * @param sh
-     * @param headless true implies no GUI objects will be created.
-     * @return the service instance information GUI for this client and job.
-     */
+  ServiceHandle serviceHandle = null;
+
+  /**
+   * initialise WSClient service information attributes from the service handle
+   * 
+   * @param sh
+   * @param headless
+   *                true implies no GUI objects will be created.
+   * @return the service instance information GUI for this client and job.
+   */
   protected WebserviceInfo setWebService(ServiceHandle sh, boolean headless)
   {
     WebServiceName = sh.getName();
     if (ServiceActions.containsKey(sh.getAbstractName()))
     {
-      WebServiceJobTitle = sh.getName(); // TODO: control sh.Name specification properly
-      // add this for short names. +(String) ServiceActions.get(sh.getAbstractName());
+      WebServiceJobTitle = sh.getName(); // TODO: control sh.Name specification
+                                          // properly
+      // add this for short names. +(String)
+      // ServiceActions.get(sh.getAbstractName());
     }
     else
     {
@@ -103,31 +120,43 @@ public abstract class WSClient
     WebserviceInfo wsInfo = null;
     if (!headless)
     {
-      wsInfo = new WebserviceInfo(WebServiceJobTitle,
-                                               WebServiceReference);
+      wsInfo = new WebserviceInfo(WebServiceJobTitle, WebServiceReference);
     }
     return wsInfo;
   }
+
   /**
-   * convenience method to pass the serviceHandle reference that instantiated this 
-   * service on to the menu entry constructor
-   * @param wsmenu the menu to which any menu entries/sub menus are to be attached
-   * @param alignFrame the alignFrame instance that provides input data for the service
+   * convenience method to pass the serviceHandle reference that instantiated
+   * this service on to the menu entry constructor
+   * 
+   * @param wsmenu
+   *                the menu to which any menu entries/sub menus are to be
+   *                attached
+   * @param alignFrame
+   *                the alignFrame instance that provides input data for the
+   *                service
    */
   public void attachWSMenuEntry(JMenu wsmenu, final AlignFrame alignFrame)
   {
-    if (serviceHandle==null)
+    if (serviceHandle == null)
     {
-      throw new Error("IMPLEMENTATION ERROR: cannot attach WS Menu Entry without service handle reference!");
+      throw new Error(
+              "IMPLEMENTATION ERROR: cannot attach WS Menu Entry without service handle reference!");
     }
     attachWSMenuEntry(wsmenu, serviceHandle, alignFrame);
   }
+
   /**
-   * method implemented by each WSClient implementation that creates menu entries that enact their service
-   * using data from alignFrame.
-   * @param wsmenu where new menu entries (and submenus) are to be attached
-   * @param serviceHandle the serviceHandle document for the service that entries are created for
+   * method implemented by each WSClient implementation that creates menu
+   * entries that enact their service using data from alignFrame.
+   * 
+   * @param wsmenu
+   *                where new menu entries (and submenus) are to be attached
+   * @param serviceHandle
+   *                the serviceHandle document for the service that entries are
+   *                created for
    * @param alignFrame
    */
-  public abstract void attachWSMenuEntry(JMenu wsmenu, final ServiceHandle serviceHandle, final AlignFrame alignFrame);
+  public abstract void attachWSMenuEntry(JMenu wsmenu,
+          final ServiceHandle serviceHandle, final AlignFrame alignFrame);
 }