X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FEBIAlfaFold.java;h=b77fc47235a7816f522a0a4786e2074da58e65ec;hb=b52f1c317e9171563a69bcf5ef41ad29e9c4da49;hp=a93f233c672ba8a0f2fdb0f0129b29c9e9bd1385;hpb=1326cefe1e16d0dd14c8861f5ec21fb60b51e7ba;p=jalview.git

diff --git a/src/jalview/ws/dbsources/EBIAlfaFold.java b/src/jalview/ws/dbsources/EBIAlfaFold.java
index a93f233..b77fc47 100644
--- a/src/jalview/ws/dbsources/EBIAlfaFold.java
+++ b/src/jalview/ws/dbsources/EBIAlfaFold.java
@@ -28,7 +28,9 @@ import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.DBRefSource;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.PDBEntry.Type;
+import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
+import jalview.datamodel.features.SequenceFeaturesI;
 import jalview.io.DataSourceType;
 import jalview.io.FileFormat;
 import jalview.io.FileFormatI;
@@ -238,6 +240,21 @@ public class EBIAlfaFold extends EbiFileRetrievedProxy
                     dbVersion, (chid == null ? id : id + chid));
             // dbentry.setMap()
             pdbcs.addDBRef(dbentry);
+            // update any feature groups
+            List<SequenceFeature> allsf = pdbcs.getFeatures().getAllFeatures();
+            List<SequenceFeature> newsf = new ArrayList<SequenceFeature>();
+            if (allsf!=null && allsf.size()>0)
+            {
+              for (SequenceFeature f:allsf)
+              {
+                if (file.equals(f.getFeatureGroup()))
+                {
+                  f = new SequenceFeature(f, f.type, f.begin, f.end, id, f.score);
+                }
+                newsf.add(f);
+              }
+              pdbcs.setSequenceFeatures(newsf);
+            }
           }
         }
         else