X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FEbiFileRetrievedProxy.java;h=1672381b292e8857555b13cda458d5ec59a9c10b;hb=47168f025aefdaa044802bd5f8f510ffe43a4808;hp=d803beae01809ce2448a884b9f88000bf95039c8;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git
diff --git a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
index d803bea..1672381 100644
--- a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
+++ b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
@@ -1,64 +1,63 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
- */
-package jalview.ws.dbsources;
-
-import java.io.BufferedReader;
-import java.io.File;
-import java.io.FileReader;
-
-import com.stevesoft.pat.Regex;
-
-import jalview.datamodel.AlignmentI;
-import jalview.ws.seqfetcher.DbSourceProxyImpl;
-
-public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl
-{
-
- /**
- * temp path to retrieved file
- */
- protected String file = null;
-
- public StringBuffer getRawRecords()
- {
- if (file == null)
- return null;
- StringBuffer bf = null;
- try
- {
- File f = new File(file);
- if (f.exists())
- {
- bf = new StringBuffer();
- BufferedReader breader = new BufferedReader(new FileReader(f));
- String line = null;
- while (breader.ready() && (line = breader.readLine()) != null)
- {
- bf.append(line);
- }
- breader.close();
- }
- } catch (Exception e)
- {
- System.err.println("Warning: problems reading temp file " + file);
- return null;
- }
- return bf;
- }
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.ws.dbsources;
+
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.FileReader;
+import jalview.ws.seqfetcher.DbSourceProxyImpl;
+
+public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl
+{
+
+ /**
+ * temp path to retrieved file
+ */
+ protected String file = null;
+
+ public StringBuffer getRawRecords()
+ {
+ if (file == null)
+ return null;
+ StringBuffer bf = null;
+ try
+ {
+ File f = new File(file);
+ if (f.exists())
+ {
+ bf = new StringBuffer();
+ BufferedReader breader = new BufferedReader(new FileReader(f));
+ String line = null;
+ while (breader.ready() && (line = breader.readLine()) != null)
+ {
+ bf.append(line);
+ }
+ breader.close();
+ }
+ } catch (Exception e)
+ {
+ System.err.println("Warning: problems reading temp file " + file);
+ return null;
+ }
+ return bf;
+ }
+
+}