X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FEbiFileRetrievedProxy.java;h=1672381b292e8857555b13cda458d5ec59a9c10b;hb=47168f025aefdaa044802bd5f8f510ffe43a4808;hp=de2a034751bac04252108497f4e702cd5ee028d1;hpb=506d60f0e188723ddc91c26824b41ac7034df3fe;p=jalview.git

diff --git a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
index de2a034..1672381 100644
--- a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
+++ b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
@@ -1,65 +1,63 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
- */
-package jalview.ws.dbsources;
-
-import java.io.BufferedReader;
-import java.io.File;
-import java.io.FileReader;
-
-import com.stevesoft.pat.Regex;
-
-import jalview.datamodel.AlignmentI;
-import jalview.ws.seqfetcher.DbSourceProxyImpl;
-
-public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl
-{
-
-  /**
-   * temp path to retrieved file
-   */
-  protected String file = null;
-
-  public StringBuffer getRawRecords()
-  {
-    if (file == null)
-      return null;
-    StringBuffer bf = null;
-    try
-    {
-      File f = new File(file);
-      if (f.exists())
-      {
-        bf = new StringBuffer();
-        BufferedReader breader = new BufferedReader(new FileReader(f));
-        String line = null;
-        while (breader.ready() && (line = breader.readLine()) != null)
-        {
-          bf.append(line);
-        }
-        breader.close();
-      }
-    } catch (Exception e)
-    {
-      System.err.println("Warning: problems reading temp file " + file);
-      return null;
-    }
-    return bf;
-  }
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.ws.dbsources;
+
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.FileReader;
+import jalview.ws.seqfetcher.DbSourceProxyImpl;
+
+public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl
+{
+
+  /**
+   * temp path to retrieved file
+   */
+  protected String file = null;
+
+  public StringBuffer getRawRecords()
+  {
+    if (file == null)
+      return null;
+    StringBuffer bf = null;
+    try
+    {
+      File f = new File(file);
+      if (f.exists())
+      {
+        bf = new StringBuffer();
+        BufferedReader breader = new BufferedReader(new FileReader(f));
+        String line = null;
+        while (breader.ready() && (line = breader.readLine()) != null)
+        {
+          bf.append(line);
+        }
+        breader.close();
+      }
+    } catch (Exception e)
+    {
+      System.err.println("Warning: problems reading temp file " + file);
+      return null;
+    }
+    return bf;
+  }
+
+}