X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FEbiFileRetrievedProxy.java;h=bc3c7b2a3e7623d4a9c0dc512ea0a2fe622e1fbd;hb=153dd62dc91da13ae732600e6ea55ddbe15eab39;hp=ec5d2345e2ea61a4c60244572946448239833cec;hpb=6b406c397d41a0f2d84b75f13e7ab478932bf57d;p=jalview.git diff --git a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java index ec5d234..bc3c7b2 100644 --- a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java +++ b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java @@ -1,3 +1,20 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) + * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + */ package jalview.ws.dbsources; import java.io.BufferedReader; @@ -19,17 +36,18 @@ public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl public StringBuffer getRawRecords() { - if (file==null) + if (file == null) return null; - StringBuffer bf=null; - try { + StringBuffer bf = null; + try + { File f = new File(file); if (f.exists()) { bf = new StringBuffer(); BufferedReader breader = new BufferedReader(new FileReader(f)); - String line=null; - while (breader.ready() && (line = breader.readLine())!=null) + String line = null; + while (breader.ready() && (line = breader.readLine()) != null) { bf.append(line); } @@ -37,7 +55,7 @@ public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl } } catch (Exception e) { - System.err.println("Warning: problens reading temp file "+file); + System.err.println("Warning: problems reading temp file " + file); return null; } return bf;