X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FEmblCdsSouce.java;fp=src%2Fjalview%2Fws%2Fdbsources%2FEmblCdsSouce.java;h=1ac5c761429a2b2f27342714009e7d2c0a63bfb3;hb=506d60f0e188723ddc91c26824b41ac7034df3fe;hp=65b4e21b5d0a1a6e1d7d651b7ce6ec291d9aa4e5;hpb=60f2d6c034560415fd0139c8bc7df0c19cae1186;p=jalview.git

diff --git a/src/jalview/ws/dbsources/EmblCdsSouce.java b/src/jalview/ws/dbsources/EmblCdsSouce.java
index 65b4e21..1ac5c76 100644
--- a/src/jalview/ws/dbsources/EmblCdsSouce.java
+++ b/src/jalview/ws/dbsources/EmblCdsSouce.java
@@ -1,3 +1,21 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
+ * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ */
 package jalview.ws.dbsources;
 
 import java.util.Hashtable;
@@ -11,14 +29,15 @@ import jalview.ws.seqfetcher.DbSourceProxy;
 public class EmblCdsSouce extends EmblXmlSource implements DbSourceProxy
 {
 
-  public EmblCdsSouce() {
+  public EmblCdsSouce()
+  {
     super();
-    addDbSourceProperty(DBRefSource.CODINGSEQDB); 
+    addDbSourceProperty(DBRefSource.CODINGSEQDB);
   }
-  
+
   public String getAccessionSeparator()
   {
-   return null;
+    return null;
   }
 
   public Regex getAccessionValidator()
@@ -34,12 +53,13 @@ public class EmblCdsSouce extends EmblXmlSource implements DbSourceProxy
 
   public String getDbVersion()
   {
-    return "0"; // TODO : this is dynamically set for a returned record - not tied to proxy
+    return "0"; // TODO : this is dynamically set for a returned record - not
+                // tied to proxy
   }
 
   public AlignmentI getSequenceRecords(String queries) throws Exception
-  { 
-    if (queries.indexOf(".")>-1)
+  {
+    if (queries.indexOf(".") > -1)
     {
       queries = queries.substring(0, queries.indexOf("."));
     }
@@ -51,6 +71,7 @@ public class EmblCdsSouce extends EmblXmlSource implements DbSourceProxy
     // TODO Auto-generated method stub
     return true;
   }
+
   /**
    * cDNA for LDHA_CHICK swissprot sequence
    */
@@ -58,6 +79,7 @@ public class EmblCdsSouce extends EmblXmlSource implements DbSourceProxy
   {
     return "CAA37824";
   }
+
   public String getDbName()
   {
     return "EMBL (CDS)";