X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FEmblXmlSource.java;h=b2fb8081b0d74ee0155dadc25bf06824548e9277;hb=48f7c55f44b0526c5f7be8ebf986052ca7dae245;hp=f672e8bee6c6aa3fe3d41a5f420bce1ef9eb83d2;hpb=72da885aa401e932e73af4a554ea338cd5015efc;p=jalview.git

diff --git a/src/jalview/ws/dbsources/EmblXmlSource.java b/src/jalview/ws/dbsources/EmblXmlSource.java
index f672e8b..b2fb808 100644
--- a/src/jalview/ws/dbsources/EmblXmlSource.java
+++ b/src/jalview/ws/dbsources/EmblXmlSource.java
@@ -64,7 +64,7 @@ public abstract class EmblXmlSource extends EbiFileRetrievedProxy
     {
       reply = dbFetch.fetchDataAsFile(
               emprefx.toLowerCase() + ":" + query.trim(), "display=xml",
-              ".xml");
+              "xml");
     } catch (Exception e)
     {
       stopQuery();
@@ -102,6 +102,11 @@ public abstract class EmblXmlSource extends EbiFileRetrievedProxy
       }
     }
 
+    /*
+     * invalid accession gets a reply with no <entry> elements, text content of
+     * EmbFile reads something like (e.g.) this ungrammatical phrase
+     * Entry: <acc> display type is either not supported or entry is not found.
+     */
     List<SequenceI> peptides = new ArrayList<SequenceI>();
     if (efile != null && efile.getEntries() != null)
     {