X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPdb.java;fp=src%2Fjalview%2Fws%2Fdbsources%2FPdb.java;h=a658089a47fa6deed99befd0aa37edbdcbadf493;hb=65740880573a48adc758bec3939ece9d9ae104dd;hp=e4326d1ee4047c706a407a901369fbadb0d61773;hpb=71aa78b8a7d54e5aeb6b278310dfd735efb77477;p=jalview.git

diff --git a/src/jalview/ws/dbsources/Pdb.java b/src/jalview/ws/dbsources/Pdb.java
index e4326d1..a658089 100644
--- a/src/jalview/ws/dbsources/Pdb.java
+++ b/src/jalview/ws/dbsources/Pdb.java
@@ -165,7 +165,7 @@ public class Pdb extends EbiFileRetrievedProxy
       // todo get rid of Type and use FileFormatI instead?
       FileFormatI fileFormat = (pdbFileFormat == Type.PDB) ? FileFormat.PDB
               : FileFormat.MMCif;
-      pdbAlignment = new FormatAdapter().readFile(file, DataSourceType.FILE,
+      pdbAlignment = new FormatAdapter().readFile(tmpFile, DataSourceType.FILE,
               fileFormat);
       if (pdbAlignment != null)
       {