X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPdb.java;h=68dda8862ff7240c56d012e4b47ef6f41445e1d1;hb=2b6a2fdd887521f16ec777aab3126d6209f2a0a6;hp=0aae38f7b69aedd5d7fd7aa7f099537f14ddc204;hpb=7d67fb613ec026dc9a265e351e7fab542e3f1d61;p=jalview.git

diff --git a/src/jalview/ws/dbsources/Pdb.java b/src/jalview/ws/dbsources/Pdb.java
index 0aae38f..68dda88 100644
--- a/src/jalview/ws/dbsources/Pdb.java
+++ b/src/jalview/ws/dbsources/Pdb.java
@@ -40,7 +40,6 @@ import jalview.ws.ebi.EBIFetchClient;
 
 import java.util.ArrayList;
 import java.util.List;
-import java.util.Vector;
 
 import com.stevesoft.pat.Regex;
 
@@ -155,9 +154,10 @@ public class Pdb extends EbiFileRetrievedProxy
     }
     try
     {
-      // convert Type.PDB/MMCIF to FileFormat.PDB/MMCIF
-      // todo get rid of Type?
-      FileFormatI fileFormat = FileFormat.valueOf(pdbFileFormat.toString());
+      // todo get rid of Type and use FileFormatI instead?
+      // todo get rid of "ext" and just use "tmp"?
+      FileFormatI fileFormat = pdbFileFormat == Type.PDB ? FileFormat.PDB
+              : FileFormat.MMCif;
       pdbAlignment = new FormatAdapter().readFile(file,
               DataSourceType.FILE, fileFormat);
       if (pdbAlignment != null)