X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfam.java;h=316c1aac7d3e7711ddd38598a87fc1343838d09d;hb=f05e348630e97e1d86d222bd22bab09d6bf0fb06;hp=93001a4ae60eab5455dd73367da1638950e799b5;hpb=7bf12085343eb53718fc159b281823243f2c9f9b;p=jalview.git diff --git a/src/jalview/ws/dbsources/Pfam.java b/src/jalview/ws/dbsources/Pfam.java index 93001a4..316c1aa 100644 --- a/src/jalview/ws/dbsources/Pfam.java +++ b/src/jalview/ws/dbsources/Pfam.java @@ -39,7 +39,7 @@ import jalview.util.Platform; abstract public class Pfam extends Xfam { public static final String FULL = "full", RP35 = "rp35", RP15 = "rp15", - RP75 = "rp75", RP55 = "rp55", SEED = "seed"; + RP75 = "rp75", RP55 = "rp55", SEED = "seed", UNIPROT = "uniprot"; public String getPfamDownloadURL(String id, String alType) { @@ -53,7 +53,10 @@ abstract public class Pfam extends Xfam protected String alignmentType; - private static final String DEFAULT_PFAM_BASEURL = "https://www.ebi.ac.uk/interpro/wwwapi/entry/pfam/$PFAMID$/?annotation=alignment:$ALTYPE$&download"; + /** + * docs are http://www.ebi.ac.uk/interpro/api/ + */ + private static final String DEFAULT_PFAM_BASEURL = "https://www.ebi.ac.uk/interpro/api/entry/pfam/$PFAMID$/?annotation=alignment:$ALTYPE$"; static {