X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfam.java;h=37108ca07c1d55047b9dcc057473ffb67d70e02a;hb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;hp=1ae72fbc43e0be91b6a134232698e9a8779e8f64;hpb=323a457c9d0643be2406b6661246e8e988c0d0f6;p=jalview.git diff --git a/src/jalview/ws/dbsources/Pfam.java b/src/jalview/ws/dbsources/Pfam.java index 1ae72fb..37108ca 100644 --- a/src/jalview/ws/dbsources/Pfam.java +++ b/src/jalview/ws/dbsources/Pfam.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle * * This file is part of Jalview. * @@ -120,7 +120,7 @@ protected abstract String getXFAMURL(); // individual references to each sequence in each family alignment that's // retrieved. startQuery(); - AlignmentI rcds = new jalview.io.FormatAdapter().readFile(getPFAMURL() + AlignmentI rcds = new jalview.io.FormatAdapter().readFile(getXFAMURL() + queries.trim().toUpperCase(), jalview.io.FormatAdapter.URL, "STH"); for (int s = 0, sNum = rcds.getHeight(); s < sNum; s++)