X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfam.java;h=456236a02efd63d3b5954230320e0aa5f646ab77;hb=1724567f3dfc3b4637aac7bdeb6633628e6a8335;hp=6cec4efe4ef550f04311800c3cc871d72b09ca30;hpb=f87f3bc59e76f6112821e01ed88cf4c3ed853379;p=jalview.git diff --git a/src/jalview/ws/dbsources/Pfam.java b/src/jalview/ws/dbsources/Pfam.java index 6cec4ef..456236a 100644 --- a/src/jalview/ws/dbsources/Pfam.java +++ b/src/jalview/ws/dbsources/Pfam.java @@ -22,6 +22,7 @@ package jalview.ws.dbsources; import jalview.bin.Cache; import jalview.datamodel.DBRefSource; +import jalview.util.Platform; import com.stevesoft.pat.Regex; @@ -35,8 +36,17 @@ import com.stevesoft.pat.Regex; */ abstract public class Pfam extends Xfam { - private static final String PFAM_DOMAIN_KEY = "PFAM_DOMAIN"; - private static final String DEFAULT_PFAM_DOMAIN = "http://pfam.xfam.org"; + /* + * append to URLs to retrieve as a gzipped file + */ + protected static final String GZIPPED = "/gzipped"; + + static final String PFAM_BASEURL_KEY = "PFAM_BASEURL"; + + private static final String DEFAULT_PFAM_BASEURL = "https://pfam.xfam.org"; + static { + Platform.addJ2SDirectDatabaseCall(DEFAULT_PFAM_BASEURL); + } public Pfam() { @@ -96,9 +106,9 @@ abstract public class Pfam extends Xfam } @Override - protected String getDomain() + protected String getURLPrefix() { - return Cache.getDefault(PFAM_DOMAIN_KEY, DEFAULT_PFAM_DOMAIN); + return Cache.getDefault(PFAM_BASEURL_KEY, DEFAULT_PFAM_BASEURL); } /*