X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfamFull.java;fp=src%2Fjalview%2Fws%2Fdbsources%2FPfamFull.java;h=25e08fcb4ba870448ef2ac65c29ebf05574bc394;hb=506d60f0e188723ddc91c26824b41ac7034df3fe;hp=3d3ab53d0f53e4f1bf5cbcd4b6c019aae23f0a4c;hpb=60f2d6c034560415fd0139c8bc7df0c19cae1186;p=jalview.git diff --git a/src/jalview/ws/dbsources/PfamFull.java b/src/jalview/ws/dbsources/PfamFull.java index 3d3ab53..25e08fc 100644 --- a/src/jalview/ws/dbsources/PfamFull.java +++ b/src/jalview/ws/dbsources/PfamFull.java @@ -1,5 +1,20 @@ -/** +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4) + * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. * + * You should have received a copy of the GNU General Public License + * along with this program; if not, write to the Free Software + * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA */ package jalview.ws.dbsources; @@ -7,7 +22,7 @@ import jalview.ws.seqfetcher.DbSourceProxy; /** * flyweight class specifying retrieval of Full family alignments from PFAM - * + * */ public class PfamFull extends Pfam implements DbSourceProxy { @@ -16,7 +31,9 @@ public class PfamFull extends Pfam implements DbSourceProxy super(); } - /* (non-Javadoc) + /* + * (non-Javadoc) + * * @see jalview.ws.dbsources.Pfam#getPFAMURL() */ protected String getPFAMURL() @@ -24,20 +41,24 @@ public class PfamFull extends Pfam implements DbSourceProxy return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry="; } - /* (non-Javadoc) + /* + * (non-Javadoc) + * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ public String getDbName() { return "PFAM (Full)"; } + public String getDbSource() { return getDbName(); // so we have unique DbSource string. } + public String getTestQuery() { - return "PF00535"; // TODO: Pick a better full alignment to retrieve. + return "PF03760"; } }