X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfamFull.java;h=06004271bb74f3780f00f473d1843df150cd0572;hb=f87f3bc59e76f6112821e01ed88cf4c3ed853379;hp=a0b480fddf013a3d413a761a733c0297ed896196;hpb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;p=jalview.git diff --git a/src/jalview/ws/dbsources/PfamFull.java b/src/jalview/ws/dbsources/PfamFull.java index a0b480f..0600427 100644 --- a/src/jalview/ws/dbsources/PfamFull.java +++ b/src/jalview/ws/dbsources/PfamFull.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1) - * Copyright (C) 2015 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,27 +20,21 @@ */ package jalview.ws.dbsources; -import jalview.ws.seqfetcher.DbSourceProxy; - /** * flyweight class specifying retrieval of Full family alignments from PFAM * */ -public class PfamFull extends Pfam implements DbSourceProxy +public class PfamFull extends Pfam { public PfamFull() { super(); } - /* - * (non-Javadoc) - * - * @see jalview.ws.dbsources.Pfam#getPFAMURL() - */ - protected String getXFAMURL() + @Override + public String getURLSuffix() { - return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry="; + return "/alignment/full"; } /* @@ -48,21 +42,25 @@ public class PfamFull extends Pfam implements DbSourceProxy * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ + @Override public String getDbName() { return "PFAM (Full)"; } + @Override public String getDbSource() { return getDbName(); // so we have unique DbSource string. } + @Override public String getTestQuery() { return "PF03760"; } + @Override public String getDbVersion() { return null;