X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfamFull.java;h=46f20537f1e484d87a39be5fd40049d722016d13;hb=297480d2e19bf7737f6ad250e044aafe64fa63e7;hp=cd9400a3e387ef109326219f6a108ca2413e0b8f;hpb=49685e6426d5ac136dce4907196751680c667670;p=jalview.git diff --git a/src/jalview/ws/dbsources/PfamFull.java b/src/jalview/ws/dbsources/PfamFull.java index cd9400a..46f2053 100644 --- a/src/jalview/ws/dbsources/PfamFull.java +++ b/src/jalview/ws/dbsources/PfamFull.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4) - * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.0.b2) + * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License @@ -22,7 +22,7 @@ import jalview.ws.seqfetcher.DbSourceProxy; /** * flyweight class specifying retrieval of Full family alignments from PFAM - * + * */ public class PfamFull extends Pfam implements DbSourceProxy { @@ -31,7 +31,9 @@ public class PfamFull extends Pfam implements DbSourceProxy super(); } - /* (non-Javadoc) + /* + * (non-Javadoc) + * * @see jalview.ws.dbsources.Pfam#getPFAMURL() */ protected String getPFAMURL() @@ -39,20 +41,24 @@ public class PfamFull extends Pfam implements DbSourceProxy return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry="; } - /* (non-Javadoc) + /* + * (non-Javadoc) + * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ public String getDbName() { return "PFAM (Full)"; } + public String getDbSource() { return getDbName(); // so we have unique DbSource string. } + public String getTestQuery() { - return "PF00535"; // TODO: Pick a better full alignment to retrieve. + return "PF03760"; } }