X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfamFull.java;h=4f5b8f559f27991f1ef72444d2e32791eca58758;hb=c926361b2442081210826ee47b6f223a9e19434a;hp=4b13110289923f15a314f843022110a7a6507e7f;hpb=47168f025aefdaa044802bd5f8f510ffe43a4808;p=jalview.git diff --git a/src/jalview/ws/dbsources/PfamFull.java b/src/jalview/ws/dbsources/PfamFull.java index 4b13110..4f5b8f5 100644 --- a/src/jalview/ws/dbsources/PfamFull.java +++ b/src/jalview/ws/dbsources/PfamFull.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,13 +20,12 @@ */ package jalview.ws.dbsources; -import jalview.ws.seqfetcher.DbSourceProxy; /** * flyweight class specifying retrieval of Full family alignments from PFAM * */ -public class PfamFull extends Pfam implements DbSourceProxy +public class PfamFull extends Pfam { public PfamFull() { @@ -38,6 +37,7 @@ public class PfamFull extends Pfam implements DbSourceProxy * * @see jalview.ws.dbsources.Pfam#getPFAMURL() */ + @Override protected String getXFAMURL() { return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry="; @@ -48,27 +48,31 @@ public class PfamFull extends Pfam implements DbSourceProxy * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ + @Override public String getDbName() { return "PFAM (Full)"; } + @Override public String getDbSource() { return getDbName(); // so we have unique DbSource string. } + @Override public String getTestQuery() { return "PF03760"; } + @Override public String getDbVersion() { return null; } - @Override + @Override public int getTier() { return 0;