X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfamFull.java;h=6cf5fda3728de4927aa0c2bbdf75627d2f61557e;hb=7bf12085343eb53718fc159b281823243f2c9f9b;hp=9b4587e1ef1c06c9a7c150afcc86c71bb7abf080;hpb=7ab5d6b0ba5fec1ea4a4239e79c476d841622485;p=jalview.git diff --git a/src/jalview/ws/dbsources/PfamFull.java b/src/jalview/ws/dbsources/PfamFull.java index 9b4587e..6cf5fda 100644 --- a/src/jalview/ws/dbsources/PfamFull.java +++ b/src/jalview/ws/dbsources/PfamFull.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,27 +20,16 @@ */ package jalview.ws.dbsources; -import jalview.ws.seqfetcher.DbSourceProxy; - /** * flyweight class specifying retrieval of Full family alignments from PFAM * */ -public class PfamFull extends Pfam implements DbSourceProxy +public class PfamFull extends Pfam { public PfamFull() { super(); - } - - /* - * (non-Javadoc) - * - * @see jalview.ws.dbsources.Pfam#getPFAMURL() - */ - protected String getXFAMURL() - { - return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry="; + alignmentType = FULL; } /* @@ -48,21 +37,25 @@ public class PfamFull extends Pfam implements DbSourceProxy * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ + @Override public String getDbName() { return "PFAM (Full)"; } + @Override public String getDbSource() { return getDbName(); // so we have unique DbSource string. } + @Override public String getTestQuery() { return "PF03760"; } + @Override public String getDbVersion() { return null;