X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfamFull.java;h=ec9fcbb482a623c36b965719e40c09f82e445319;hb=f4766a7bbcfae845fc95923b01fa14ff83d589ff;hp=a9790985bd44b61d3a37134de65627bafc805b7a;hpb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;p=jalview.git diff --git a/src/jalview/ws/dbsources/PfamFull.java b/src/jalview/ws/dbsources/PfamFull.java index a979098..ec9fcbb 100644 --- a/src/jalview/ws/dbsources/PfamFull.java +++ b/src/jalview/ws/dbsources/PfamFull.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9) - * Copyright (C) 2015 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,13 +20,11 @@ */ package jalview.ws.dbsources; -import jalview.ws.seqfetcher.DbSourceProxy; - /** * flyweight class specifying retrieval of Full family alignments from PFAM * */ -public class PfamFull extends Pfam implements DbSourceProxy +public class PfamFull extends Pfam { public PfamFull() { @@ -38,9 +36,17 @@ public class PfamFull extends Pfam implements DbSourceProxy * * @see jalview.ws.dbsources.Pfam#getPFAMURL() */ + @Override protected String getXFAMURL() { - return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry="; + return "http://pfam.xfam.org/family/"; + + } + + @Override + public String getXFAMURLSUFFIX() + { + return "/alignment/full"; } /* @@ -48,21 +54,25 @@ public class PfamFull extends Pfam implements DbSourceProxy * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ + @Override public String getDbName() { return "PFAM (Full)"; } + @Override public String getDbSource() { return getDbName(); // so we have unique DbSource string. } + @Override public String getTestQuery() { return "PF03760"; } + @Override public String getDbVersion() { return null;