X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfamSeed.java;h=17bf5d1acfbb77ee08e433e6630dc52767bd38fb;hb=db93a1adcbe0a4eaaf06e0a70ade0d6c5c1961c3;hp=bc12360b9aaf0fe02854f0cc51f505f0d27e1918;hpb=47168f025aefdaa044802bd5f8f510ffe43a4808;p=jalview.git diff --git a/src/jalview/ws/dbsources/PfamSeed.java b/src/jalview/ws/dbsources/PfamSeed.java index bc12360..17bf5d1 100644 --- a/src/jalview/ws/dbsources/PfamSeed.java +++ b/src/jalview/ws/dbsources/PfamSeed.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) + * Copyright (C) 2015 The Jalview Authors * * This file is part of Jalview. * @@ -20,15 +20,13 @@ */ package jalview.ws.dbsources; -import jalview.ws.seqfetcher.DbSourceProxy; - /** * flyweight class specifying retrieval of Seed alignments from PFAM * * @author JimP * */ -public class PfamSeed extends Pfam implements DbSourceProxy +public class PfamSeed extends Pfam { public PfamSeed() { @@ -40,9 +38,10 @@ public class PfamSeed extends Pfam implements DbSourceProxy * * @see jalview.ws.dbsources.Pfam#getPFAMURL() */ + @Override protected String getXFAMURL() { - return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry="; + return "http://pfam.xfam.org/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry="; } /* @@ -50,16 +49,19 @@ public class PfamSeed extends Pfam implements DbSourceProxy * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ + @Override public String getDbName() { return "PFAM (Seed)"; } + @Override public String getDbSource() { return jalview.datamodel.DBRefSource.PFAM; // archetype source } + @Override public String getTestQuery() { return "PF03760";