X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfamSeed.java;h=6d486e8deda4d730cb442fe6158dd19425303270;hb=0ad352a33dee2be3c35a875475e504a29a8b3ad6;hp=2ea75af00e9ee115087a68a14c0182eb62a95760;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/src/jalview/ws/dbsources/PfamSeed.java b/src/jalview/ws/dbsources/PfamSeed.java index 2ea75af..6d486e8 100644 --- a/src/jalview/ws/dbsources/PfamSeed.java +++ b/src/jalview/ws/dbsources/PfamSeed.java @@ -20,29 +20,18 @@ */ package jalview.ws.dbsources; -import jalview.ws.seqfetcher.DbSourceProxy; - /** * flyweight class specifying retrieval of Seed alignments from PFAM * * @author JimP * */ -public class PfamSeed extends Pfam implements DbSourceProxy +public class PfamSeed extends Pfam { public PfamSeed() { super(); - } - - /* - * (non-Javadoc) - * - * @see jalview.ws.dbsources.Pfam#getPFAMURL() - */ - protected String getXFAMURL() - { - return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry="; + alignmentType=SEED; } /* @@ -50,16 +39,19 @@ public class PfamSeed extends Pfam implements DbSourceProxy * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ + @Override public String getDbName() { return "PFAM (Seed)"; } + @Override public String getDbSource() { return jalview.datamodel.DBRefSource.PFAM; // archetype source } + @Override public String getTestQuery() { return "PF03760";