X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfamSeed.java;h=98febada7d79c232468323f0dd19c9bc5415a3e3;hb=445459c0de00fb5fdb82e818c551950ff90069fe;hp=e0e2b4fb623f60cf7432a11a5b09923889ea8e08;hpb=2de36153a84ca246643cd28b2ce05e9f4159dd89;p=jalview.git

diff --git a/src/jalview/ws/dbsources/PfamSeed.java b/src/jalview/ws/dbsources/PfamSeed.java
index e0e2b4f..98febad 100644
--- a/src/jalview/ws/dbsources/PfamSeed.java
+++ b/src/jalview/ws/dbsources/PfamSeed.java
@@ -1,5 +1,19 @@
-/**
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * 
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
  * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  */
 package jalview.ws.dbsources;
 
@@ -7,8 +21,9 @@ import jalview.ws.seqfetcher.DbSourceProxy;
 
 /**
  * flyweight class specifying retrieval of Seed alignments from PFAM
+ * 
  * @author JimP
- *
+ * 
  */
 public class PfamSeed extends Pfam implements DbSourceProxy
 {
@@ -17,28 +32,34 @@ public class PfamSeed extends Pfam implements DbSourceProxy
     super();
   }
 
-  /* (non-Javadoc)
+  /*
+   * (non-Javadoc)
+   * 
    * @see jalview.ws.dbsources.Pfam#getPFAMURL()
    */
-  protected String getPFAMURL()
+  protected String getXFAMURL()
   {
     return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry=";
   }
 
-  /* (non-Javadoc)
+  /*
+   * (non-Javadoc)
+   * 
    * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
    */
   public String getDbName()
   {
     return "PFAM (Seed)";
   }
+
   public String getDbSource()
   {
     return jalview.datamodel.DBRefSource.PFAM; // archetype source
   }
+
   public String getTestQuery()
   {
-    return "PF00535";
+    return "PF03760";
   }
 
 }