X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfamSeed.java;h=d895ea3b159d6506e8942fdc491d5962e65b75b3;hb=297480d2e19bf7737f6ad250e044aafe64fa63e7;hp=9b91195cab66119182c66227d87f9628636fe3bd;hpb=1facaef788a7570369f6f0e4fee6c8bce78335ea;p=jalview.git diff --git a/src/jalview/ws/dbsources/PfamSeed.java b/src/jalview/ws/dbsources/PfamSeed.java index 9b91195..d895ea3 100644 --- a/src/jalview/ws/dbsources/PfamSeed.java +++ b/src/jalview/ws/dbsources/PfamSeed.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4) - * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.0.b2) + * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License @@ -22,8 +22,9 @@ import jalview.ws.seqfetcher.DbSourceProxy; /** * flyweight class specifying retrieval of Seed alignments from PFAM + * * @author JimP - * + * */ public class PfamSeed extends Pfam implements DbSourceProxy { @@ -32,7 +33,9 @@ public class PfamSeed extends Pfam implements DbSourceProxy super(); } - /* (non-Javadoc) + /* + * (non-Javadoc) + * * @see jalview.ws.dbsources.Pfam#getPFAMURL() */ protected String getPFAMURL() @@ -40,17 +43,21 @@ public class PfamSeed extends Pfam implements DbSourceProxy return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry="; } - /* (non-Javadoc) + /* + * (non-Javadoc) + * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ public String getDbName() { return "PFAM (Seed)"; } + public String getDbSource() { return jalview.datamodel.DBRefSource.PFAM; // archetype source } + public String getTestQuery() { return "PF03760";