X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPfamSeed.java;h=f64d07f277264161bd5ea06536e2ab79a78329f0;hb=df81a9e1abd4d4424d6d24b37d93f17bffd3649c;hp=e39fe31243e814c2e119812b5229f621ba0e8599;hpb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;p=jalview.git diff --git a/src/jalview/ws/dbsources/PfamSeed.java b/src/jalview/ws/dbsources/PfamSeed.java index e39fe31..f64d07f 100644 --- a/src/jalview/ws/dbsources/PfamSeed.java +++ b/src/jalview/ws/dbsources/PfamSeed.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) - * Copyright (C) 2015 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,29 +20,23 @@ */ package jalview.ws.dbsources; -import jalview.ws.seqfetcher.DbSourceProxy; - /** * flyweight class specifying retrieval of Seed alignments from PFAM * * @author JimP * */ -public class PfamSeed extends Pfam implements DbSourceProxy +public class PfamSeed extends Pfam { public PfamSeed() { super(); } - /* - * (non-Javadoc) - * - * @see jalview.ws.dbsources.Pfam#getPFAMURL() - */ - protected String getXFAMURL() + @Override + public String getURLSuffix() { - return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry="; + return "/alignment/seed" + GZIPPED; } /* @@ -50,16 +44,19 @@ public class PfamSeed extends Pfam implements DbSourceProxy * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ + @Override public String getDbName() { return "PFAM (Seed)"; } + @Override public String getDbSource() { return jalview.datamodel.DBRefSource.PFAM; // archetype source } + @Override public String getTestQuery() { return "PF03760";