X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FRfam.java;h=98df1662f4ac847fc332d98d818dcbd2a1ca0644;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=97f73d0c37b7879d0c5c76f3ba51d2af256bed3f;hpb=37de9310bec3501cbc6381e0c3dcb282fcaad812;p=jalview.git

diff --git a/src/jalview/ws/dbsources/Rfam.java b/src/jalview/ws/dbsources/Rfam.java
index 97f73d0..98df166 100644
--- a/src/jalview/ws/dbsources/Rfam.java
+++ b/src/jalview/ws/dbsources/Rfam.java
@@ -20,7 +20,9 @@
  */
 package jalview.ws.dbsources;
 
+import jalview.bin.Cache;
 import jalview.datamodel.DBRefSource;
+import jalview.util.Platform;
 
 import com.stevesoft.pat.Regex;
 
@@ -31,6 +33,25 @@ import com.stevesoft.pat.Regex;
  */
 abstract public class Rfam extends Xfam
 {
+  static final String RFAM_BASEURL_KEY = "RFAM_BASEURL";
+
+  private static final String DEFAULT_RFAM_BASEURL = "https://rfam.xfam.org";
+
+  static
+  {
+    Platform.addJ2SDirectDatabaseCall(DEFAULT_RFAM_BASEURL);
+  }
+
+  /*
+   * append to URLs to retrieve as a gzipped file
+   */
+  protected static final String GZIPPED = "?gzip=1&download=1";
+
+  @Override
+  protected String getURLPrefix()
+  {
+    return Cache.getDefault(RFAM_BASEURL_KEY, DEFAULT_RFAM_BASEURL);
+  }
 
   public Rfam()
   {
@@ -46,7 +67,6 @@ abstract public class Rfam extends Xfam
   @Override
   public String getAccessionSeparator()
   {
-    // TODO Auto-generated method stub
     return null;
   }
 
@@ -58,7 +78,6 @@ abstract public class Rfam extends Xfam
   @Override
   public Regex getAccessionValidator()
   {
-    // TODO Auto-generated method stub
     return null;
   }
 
@@ -82,18 +101,9 @@ abstract public class Rfam extends Xfam
   @Override
   public String getDbVersion()
   {
-    // TODO Auto-generated method stub
     return null;
   }
 
-  /**
-   * Returns base URL for selected Rfam alignment type
-   * 
-   * @return RFAM URL stub for this DbSource
-   */
-  @Override
-  protected abstract String getXFAMURL();
-
   /*
    * (non-Javadoc)
    *