X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FRfamFull.java;h=396511c82fa26f7f278a291b07fa9a16c4ca3a6b;hb=8db8aee6e66b6f57d327555c0bb6a174f3d01f6a;hp=562d9d806153c8d8487199ef82f6e8c224038b8e;hpb=ab43013b7e357b84b4abade0dba949668dfb2a0e;p=jalview.git diff --git a/src/jalview/ws/dbsources/RfamFull.java b/src/jalview/ws/dbsources/RfamFull.java index 562d9d8..396511c 100644 --- a/src/jalview/ws/dbsources/RfamFull.java +++ b/src/jalview/ws/dbsources/RfamFull.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,29 +20,23 @@ */ package jalview.ws.dbsources; -import jalview.ws.seqfetcher.DbSourceProxy; - /** * Flyweight class specifying retrieval of Full family alignments from RFAM * * @author Lauren Michelle Lui * */ -public class RfamFull extends Rfam implements DbSourceProxy +public class RfamFull extends Rfam { public RfamFull() { super(); } - /* - * (non-Javadoc) - * - * @see jalview.ws.dbsources.Rfam#getXFAMURL() - */ - protected String getXFAMURL() + @Override + public String getURLSuffix() { - return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc="; + return "/alignment/full" + GZIPPED; } /* @@ -50,16 +44,19 @@ public class RfamFull extends Rfam implements DbSourceProxy * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ + @Override public String getDbName() { return "RFAM (Full)"; } + @Override public String getDbSource() { return getDbName(); // so we have unique DbSource string. } + @Override public String getTestQuery() { // Can be retrieved from http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014 @@ -68,6 +65,7 @@ public class RfamFull extends Rfam implements DbSourceProxy return "RF00014"; } + @Override public String getDbVersion() { return null;