X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FRfamFull.java;h=bc5a6c58c527fc8e19a71ab43a6fad0974974821;hb=db93a1adcbe0a4eaaf06e0a70ade0d6c5c1961c3;hp=a214d511a63ba3929c568ae5977b5cc3967976cc;hpb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;p=jalview.git diff --git a/src/jalview/ws/dbsources/RfamFull.java b/src/jalview/ws/dbsources/RfamFull.java index a214d51..bc5a6c5 100644 --- a/src/jalview/ws/dbsources/RfamFull.java +++ b/src/jalview/ws/dbsources/RfamFull.java @@ -20,15 +20,13 @@ */ package jalview.ws.dbsources; -import jalview.ws.seqfetcher.DbSourceProxy; - /** * Flyweight class specifying retrieval of Full family alignments from RFAM * * @author Lauren Michelle Lui * */ -public class RfamFull extends Rfam implements DbSourceProxy +public class RfamFull extends Rfam { public RfamFull() { @@ -40,9 +38,11 @@ public class RfamFull extends Rfam implements DbSourceProxy * * @see jalview.ws.dbsources.Rfam#getXFAMURL() */ + @Override protected String getXFAMURL() { - return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc="; + return "http://rfam.xfam.org/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc="; + } /* @@ -50,16 +50,19 @@ public class RfamFull extends Rfam implements DbSourceProxy * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ + @Override public String getDbName() { return "RFAM (Full)"; } + @Override public String getDbSource() { return getDbName(); // so we have unique DbSource string. } + @Override public String getTestQuery() { // Can be retrieved from http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014 @@ -68,6 +71,7 @@ public class RfamFull extends Rfam implements DbSourceProxy return "RF00014"; } + @Override public String getDbVersion() { return null;