X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FRfamFull.java;h=e1e9e9a9905f8b334dc5a79a038c536e082d5e54;hb=c926361b2442081210826ee47b6f223a9e19434a;hp=f8b1952d4b14431be3722e8c7ef71ca7f604fd47;hpb=8daeb715c3e8ec8486f26708361698095084232f;p=jalview.git
diff --git a/src/jalview/ws/dbsources/RfamFull.java b/src/jalview/ws/dbsources/RfamFull.java
index f8b1952..e1e9e9a 100644
--- a/src/jalview/ws/dbsources/RfamFull.java
+++ b/src/jalview/ws/dbsources/RfamFull.java
@@ -1,24 +1,25 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
-
package jalview.ws.dbsources;
-import jalview.ws.seqfetcher.DbSourceProxy;
/**
* Flyweight class specifying retrieval of Full family alignments from RFAM
@@ -26,7 +27,7 @@ import jalview.ws.seqfetcher.DbSourceProxy;
* @author Lauren Michelle Lui
*
*/
-public class RfamFull extends Rfam implements DbSourceProxy
+public class RfamFull extends Rfam
{
public RfamFull()
{
@@ -38,6 +39,7 @@ public class RfamFull extends Rfam implements DbSourceProxy
*
* @see jalview.ws.dbsources.Rfam#getXFAMURL()
*/
+ @Override
protected String getXFAMURL()
{
return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc=";
@@ -48,16 +50,19 @@ public class RfamFull extends Rfam implements DbSourceProxy
*
* @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
*/
+ @Override
public String getDbName()
{
return "RFAM (Full)";
}
+ @Override
public String getDbSource()
{
return getDbName(); // so we have unique DbSource string.
}
+ @Override
public String getTestQuery()
{
// Can be retrieved from http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
@@ -66,9 +71,15 @@ public class RfamFull extends Rfam implements DbSourceProxy
return "RF00014";
}
+ @Override
public String getDbVersion()
{
return null;
}
+ @Override
+ public int getTier()
+ {
+ return 0;
+ }
}