X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FRfamSeed.java;h=2850fd54a1d0749633b5b6c0a167f1ea967cceaa;hb=8449dcdc681745be31669b83c91ca74a91f85b41;hp=63431bc49d1f697a47e658e55e4aa1de4e45f869;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git
diff --git a/src/jalview/ws/dbsources/RfamSeed.java b/src/jalview/ws/dbsources/RfamSeed.java
index 63431bc..2850fd5 100644
--- a/src/jalview/ws/dbsources/RfamSeed.java
+++ b/src/jalview/ws/dbsources/RfamSeed.java
@@ -1,23 +1,25 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.ws.dbsources;
-import jalview.ws.seqfetcher.DbSourceProxy;
/**
* Flyweight class specifying retrieval of Seed family alignments from RFAM
@@ -25,7 +27,7 @@ import jalview.ws.seqfetcher.DbSourceProxy;
* @author Lauren Michelle Lui
*
*/
-public class RfamSeed extends Rfam implements DbSourceProxy
+public class RfamSeed extends Rfam
{
public RfamSeed()
{
@@ -37,6 +39,7 @@ public class RfamSeed extends Rfam implements DbSourceProxy
*
* @see jalview.ws.dbsources.Rfam#getRFAMURL()
*/
+ @Override
protected String getXFAMURL()
{
return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&nseLabels=0&format=stockholm&acc=";
@@ -49,24 +52,33 @@ public class RfamSeed extends Rfam implements DbSourceProxy
*
* @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
*/
+ @Override
public String getDbName()
{
return "RFAM (Seed)";
}
+ @Override
public String getDbSource()
{
return getDbName(); // so we have unique DbSource string.
}
+ @Override
public String getTestQuery()
{
return "RF00014";
} // http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
+ @Override
public String getDbVersion()
{
return null;
}
+ @Override
+ public int getTier()
+ {
+ return 0;
+ }
}