X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FRfamSeed.java;h=f71454733bb26f898cfa971c933b662bb902848a;hb=f4766a7bbcfae845fc95923b01fa14ff83d589ff;hp=75fa62b4711b7bc4b18e0605be55697c38046ae8;hpb=1fe15a0bb2006a51a24f4757c89337d99db4ad26;p=jalview.git

diff --git a/src/jalview/ws/dbsources/RfamSeed.java b/src/jalview/ws/dbsources/RfamSeed.java
index 75fa62b..f714547 100644
--- a/src/jalview/ws/dbsources/RfamSeed.java
+++ b/src/jalview/ws/dbsources/RfamSeed.java
@@ -1,31 +1,32 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.ws.dbsources;
 
-import jalview.ws.seqfetcher.DbSourceProxy;
-
 /**
  * Flyweight class specifying retrieval of Seed family alignments from RFAM
  * 
  * @author Lauren Michelle Lui
  * 
  */
-public class RfamSeed extends Rfam implements DbSourceProxy
+public class RfamSeed extends Rfam
 {
   public RfamSeed()
   {
@@ -37,11 +38,17 @@ public class RfamSeed extends Rfam implements DbSourceProxy
    * 
    * @see jalview.ws.dbsources.Rfam#getRFAMURL()
    */
+  @Override
   protected String getXFAMURL()
   {
-    return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&nseLabels=0&format=stockholm&acc=";
-    // Janelia Farms url
-    // "http://rfam.janelia.org/cgi-bin/getalignment?type=seed&fmt=stockholm&acc=";
+    return "http://rfam.xfam.org/family/";
+  }
+
+  @Override
+  public String getXFAMURLSUFFIX()
+  {
+    // to download gzipped file add '?gzip=1'
+    return "/alignment/stockholm";
   }
 
   /*
@@ -49,21 +56,25 @@ public class RfamSeed extends Rfam implements DbSourceProxy
    * 
    * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
    */
+  @Override
   public String getDbName()
   {
     return "RFAM (Seed)";
   }
 
+  @Override
   public String getDbSource()
   {
     return getDbName(); // so we have unique DbSource string.
   }
 
+  @Override
   public String getTestQuery()
   {
     return "RF00014";
   } // http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
 
+  @Override
   public String getDbVersion()
   {
     return null;