X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FTDBeacons.java;h=345e21758fca362d94c5ea57cd58914bf8416fe5;hb=9d2408483e451285fd555c3cd6e0273977acbaa7;hp=12fefeab111ef900bcd598953a895085d8933f8b;hpb=206e0806fc13bc7ec85ff351c75492d7be3ef407;p=jalview.git

diff --git a/src/jalview/ws/dbsources/TDBeacons.java b/src/jalview/ws/dbsources/TDBeacons.java
index 12fefea..345e217 100644
--- a/src/jalview/ws/dbsources/TDBeacons.java
+++ b/src/jalview/ws/dbsources/TDBeacons.java
@@ -20,6 +20,8 @@
  */
 package jalview.ws.dbsources;
 
+import java.util.Locale;
+
 import jalview.bin.Cache;
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
@@ -70,6 +72,8 @@ public class TDBeacons extends DbSourceProxyImpl
   private static final String DEFAULT_UNIPROT_DOMAIN = "https://www.uniprot.org";
 
   private static final String BAR_DELIMITER = "|";
+  
+  private static final String DEFAULT_THREEDBEACONS_DOMAIN = "https://wwwdev.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons-hub-api/uniprot/summary/";
 
   /**
    * Constructor
@@ -82,6 +86,7 @@ public class TDBeacons extends DbSourceProxyImpl
   private String getDomain()
   {
     return Cache.getDefault("UNIPROT_DOMAIN", DEFAULT_UNIPROT_DOMAIN);
+    //return Cache.getDefault("3DB_DOMAIN", DEFAULT_THREEDBEACONS_DOMAIN );
   }
 
   /*
@@ -139,12 +144,13 @@ public class TDBeacons extends DbSourceProxyImpl
     startQuery();
     try
     {
-      queries = queries.toUpperCase().replaceAll(
+      queries = queries.toUpperCase(Locale.ROOT).replaceAll(
               "(UNIPROT\\|?|UNIPROT_|UNIREF\\d+_|UNIREF\\d+\\|?)", "");
       AlignmentI al = null;
 
       String downloadstring = getDomain() + "/uniprot/" + queries
               + ".xml";
+//      String downloadstring = getDomain() + queries + ".json";
 
       URL url = new URL(downloadstring);
       URLConnection urlconn = url.openConnection();