X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FUniprot.java;h=6ddd82812080fbd754fa200846ff11d1bcf949f8;hb=e957648a02a9e25795a92a4f39a5e3c1e7adb230;hp=4898b423bcb384cde60c823c74792ed5dac76532;hpb=35ad61aaa9de6d49465fdb9435685ea0e9766418;p=jalview.git diff --git a/src/jalview/ws/dbsources/Uniprot.java b/src/jalview/ws/dbsources/Uniprot.java index 4898b42..6ddd828 100644 --- a/src/jalview/ws/dbsources/Uniprot.java +++ b/src/jalview/ws/dbsources/Uniprot.java @@ -28,8 +28,9 @@ import jalview.datamodel.PDBEntry; import jalview.datamodel.Sequence; import jalview.datamodel.SequenceFeature; import jalview.datamodel.SequenceI; -import jalview.datamodel.UniprotEntry; -import jalview.datamodel.UniprotFile; +import jalview.datamodel.xdb.uniprot.UniprotEntry; +import jalview.datamodel.xdb.uniprot.UniprotFeature; +import jalview.datamodel.xdb.uniprot.UniprotFile; import jalview.ws.ebi.EBIFetchClient; import jalview.ws.seqfetcher.DbSourceProxyImpl; @@ -254,16 +255,16 @@ public class Uniprot extends DbSourceProxyImpl } } - } sequence.setPDBId(onlyPdbEntries); if (entry.getFeature() != null) { - for (SequenceFeature sf : entry.getFeature()) + for (UniprotFeature uf : entry.getFeature()) { - SequenceFeature copy = new SequenceFeature(sf, sf.getBegin(), - sf.getEnd(), "Uniprot"); + SequenceFeature copy = new SequenceFeature(uf.getType(), + uf.getDescription(), uf.getStatus(), uf.getBegin(), + uf.getEnd(), "Uniprot"); sequence.addSequenceFeature(copy); } }