X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FXfam.java;h=3554f0177faf6efc15f549db7b1342f2a950e918;hb=aa6643d51133a8541dcbe30191b344aa09907a5f;hp=508047dce2190107db0ba2065fd2fdb3f3dbdb22;hpb=076b4cf9df955f03694f036ebc60728310654ae5;p=jalview.git diff --git a/src/jalview/ws/dbsources/Xfam.java b/src/jalview/ws/dbsources/Xfam.java index 508047d..3554f01 100644 --- a/src/jalview/ws/dbsources/Xfam.java +++ b/src/jalview/ws/dbsources/Xfam.java @@ -22,6 +22,8 @@ package jalview.ws.dbsources; import jalview.datamodel.AlignmentI; import jalview.datamodel.DBRefEntry; +import jalview.io.DataSourceType; +import jalview.io.FileFormat; import jalview.io.FormatAdapter; import jalview.ws.seqfetcher.DbSourceProxyImpl; @@ -56,8 +58,7 @@ public abstract class Xfam extends DbSourceProxyImpl // TODO: trap HTTP 404 exceptions and return null AlignmentI rcds = new FormatAdapter().readFile(getXFAMURL() + queries.trim().toUpperCase() + getXFAMURLSUFFIX(), - jalview.io.FormatAdapter.URL, - "STH"); + DataSourceType.URL, FileFormat.Stockholm); for (int s = 0, sNum = rcds.getHeight(); s < sNum; s++) { rcds.getSequenceAt(s).addDBRef(new DBRefEntry(getXfamSource(),