X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FXfam.java;h=3554f0177faf6efc15f549db7b1342f2a950e918;hb=ff8c06845590fd9fd423aa59809dcce9610ab295;hp=13686d2761ca594cf0e96e59828bfc7e25c65b64;hpb=db93a1adcbe0a4eaaf06e0a70ade0d6c5c1961c3;p=jalview.git diff --git a/src/jalview/ws/dbsources/Xfam.java b/src/jalview/ws/dbsources/Xfam.java index 13686d2..3554f01 100644 --- a/src/jalview/ws/dbsources/Xfam.java +++ b/src/jalview/ws/dbsources/Xfam.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) - * Copyright (C) 2015 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -22,6 +22,8 @@ package jalview.ws.dbsources; import jalview.datamodel.AlignmentI; import jalview.datamodel.DBRefEntry; +import jalview.io.DataSourceType; +import jalview.io.FileFormat; import jalview.io.FormatAdapter; import jalview.ws.seqfetcher.DbSourceProxyImpl; @@ -56,7 +58,7 @@ public abstract class Xfam extends DbSourceProxyImpl // TODO: trap HTTP 404 exceptions and return null AlignmentI rcds = new FormatAdapter().readFile(getXFAMURL() + queries.trim().toUpperCase() + getXFAMURLSUFFIX(), - jalview.io.FormatAdapter.URL, "STH"); + DataSourceType.URL, FileFormat.Stockholm); for (int s = 0, sNum = rcds.getHeight(); s < sNum; s++) { rcds.getSequenceAt(s).addDBRef(new DBRefEntry(getXfamSource(),