X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FXfam.java;h=508047dce2190107db0ba2065fd2fdb3f3dbdb22;hb=65d6d09cd08743d481d39521bb0298ea683888f8;hp=26c999752edcaecd776a42e252f36f3005c0d5f7;hpb=409fd993c6e32e999b24082aae107a043a590f8f;p=jalview.git diff --git a/src/jalview/ws/dbsources/Xfam.java b/src/jalview/ws/dbsources/Xfam.java index 26c9997..508047d 100644 --- a/src/jalview/ws/dbsources/Xfam.java +++ b/src/jalview/ws/dbsources/Xfam.java @@ -55,7 +55,9 @@ public abstract class Xfam extends DbSourceProxyImpl startQuery(); // TODO: trap HTTP 404 exceptions and return null AlignmentI rcds = new FormatAdapter().readFile(getXFAMURL() - + queries.trim().toUpperCase(), FormatAdapter.URL, "STH"); + + queries.trim().toUpperCase() + getXFAMURLSUFFIX(), + jalview.io.FormatAdapter.URL, + "STH"); for (int s = 0, sNum = rcds.getHeight(); s < sNum; s++) { rcds.getSequenceAt(s).addDBRef(new DBRefEntry(getXfamSource(), @@ -81,4 +83,14 @@ public abstract class Xfam extends DbSourceProxyImpl return true; } + /** + * default suffix to append the retrieval URL for this source. + * + * @return "" for most Xfam sources + */ + public String getXFAMURLSUFFIX() + { + return ""; + } + }