X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FXfam.java;h=b83f558a9cb5582ea9ea868fb29000389e8d9a0e;hb=3d2750d886f1b6015b2fc3f8671a6cf3e32bb07a;hp=26291ebf182f75b5526280d545e880db0f85e0f4;hpb=3d0101179759ef157b088ea135423cd909512d9f;p=jalview.git diff --git a/src/jalview/ws/dbsources/Xfam.java b/src/jalview/ws/dbsources/Xfam.java index 26291eb..b83f558 100644 --- a/src/jalview/ws/dbsources/Xfam.java +++ b/src/jalview/ws/dbsources/Xfam.java @@ -42,7 +42,12 @@ public abstract class Xfam extends DbSourceProxyImpl super(); } - protected abstract String getXFAMURL(); + /** + * the base URL for this Xfam-like service + * + * @return + */ + protected abstract String getURLPrefix(); @Override public abstract String getDbVersion(); @@ -57,8 +62,7 @@ public abstract class Xfam extends DbSourceProxyImpl // retrieved. startQuery(); // TODO: trap HTTP 404 exceptions and return null - String xfamUrl = getXFAMURL() + queries.trim().toUpperCase() - + getXFAMURLSUFFIX(); + String xfamUrl = getURL(queries); if (Cache.log != null) { @@ -83,6 +87,12 @@ public abstract class Xfam extends DbSourceProxyImpl return rcds; } + String getURL(String queries) + { + return getURLPrefix() + "/family/" + queries.trim().toUpperCase() + + getURLSuffix(); + } + /** * Pfam and Rfam provide alignments */ @@ -97,7 +107,7 @@ public abstract class Xfam extends DbSourceProxyImpl * * @return "" for most Xfam sources */ - public String getXFAMURLSUFFIX() + public String getURLSuffix() { return ""; }