X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2Fdas%2Fdatamodel%2FJalviewSource.java;h=f8efb49f623d5f5a1ace0ad5bc3828a110877dea;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=f3729a849350f0f0276f3effdcce0dcaaf1514fe;hpb=b57a02c25e335d033c97f8a6bacd6b54f62bd2b6;p=jalview.git

diff --git a/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java b/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
index f3729a8..f8efb49 100644
--- a/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
+++ b/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.ws.dbsources.das.datamodel;
 
 import java.text.ParseException;
@@ -10,7 +30,6 @@ import java.util.Map;
 import org.biodas.jdas.client.threads.MultipleConnectionPropertyProviderI;
 import org.biodas.jdas.dassources.Capabilities;
 import org.biodas.jdas.dassources.utils.DasTimeFormat;
-import org.biodas.jdas.dassources.utils.RegistrySourceAdapter;
 import org.biodas.jdas.schema.sources.CAPABILITY;
 import org.biodas.jdas.schema.sources.COORDINATES;
 import org.biodas.jdas.schema.sources.MAINTAINER;
@@ -18,6 +37,7 @@ import org.biodas.jdas.schema.sources.PROP;
 import org.biodas.jdas.schema.sources.SOURCE;
 import org.biodas.jdas.schema.sources.VERSION;
 
+import jalview.util.MessageManager;
 import jalview.ws.dbsources.das.api.jalviewSourceI;
 import jalview.ws.seqfetcher.DbSourceProxy;
 
@@ -327,7 +347,7 @@ public class JalviewSource implements jalviewSourceI
         int p = cap.getQueryUri().lastIndexOf(capname);
         if (p < -1)
         {
-          throw new Exception("Invalid das source: " + source.getUri());
+          throw new Exception(MessageManager.formatMessage("exception.invalid_das_source", new String[]{source.getUri()}));
         }
         if (cap.getQueryUri().charAt(p) == '/')
         {
@@ -350,4 +370,12 @@ public class JalviewSource implements jalviewSourceI
     return isLaterThan(getVersion().getCreated(), other.getVersion()
             .getCreated());
   }
+
+  @Override
+  public boolean isReferenceSource()
+  {
+    // TODO check source object for indication that we are the primary for a DAS
+    // coordinate system
+    return false;
+  }
 }