X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fio%2Fmime%2FJalviewMimeContentHandler.java;h=920ab3a50fca1792f1eccf890f9d7113de0badd4;hb=59d682209891099d46b960509907c79e3fb276fe;hp=53f64366fb08d0a8784d10c9cd27bee2aa1019dc;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git

diff --git a/src/jalview/ws/io/mime/JalviewMimeContentHandler.java b/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
index 53f6436..920ab3a 100644
--- a/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
+++ b/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
@@ -1,20 +1,20 @@
-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- *
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * 
  * This file is part of Jalview.
- *
+ * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
- *
+ * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- *******************************************************************************/
+ */
 package jalview.ws.io.mime;
 
 import jalview.io.packed.DataProvider;
@@ -31,12 +31,12 @@ import org.apache.james.mime4j.parser.ContentHandler;
 import org.apache.james.mime4j.parser.Field;
 
 /**
- * ContentHandler for parsing mime encoded messages into Jalview objects.
- * TODO: complete implementation
- * TODO: test implementation
- * TODO: hook in to Jalview IO and service response parser.
+ * ContentHandler for parsing mime encoded messages into Jalview objects. TODO:
+ * complete implementation TODO: test implementation TODO: hook in to Jalview IO
+ * and service response parser.
+ * 
  * @author JimP
- *
+ * 
  */
 public class JalviewMimeContentHandler implements ContentHandler
 {
@@ -47,122 +47,126 @@ public class JalviewMimeContentHandler implements ContentHandler
 
   /**
    * create a new handler to process a Jalview mime message.
+   * 
    * @param ds
    */
   public JalviewMimeContentHandler(JalviewDataset ds)
   {
-    context=ds;
+    context = ds;
   }
+
   /**
    * type of data pack being parsed currently
    */
   String currentType;
+
   /**
    * name of data pack being parsed currently
    */
   String currentName;
-  
+
   /**
-   * sources for data to be parsed 
+   * sources for data to be parsed
    */
-  List<DataProvider> dataItems = new ArrayList<DataProvider>(); 
-  
+  List<DataProvider> dataItems = new ArrayList<DataProvider>();
+
   @Override
   public void body(BodyDescriptor arg0, InputStream arg1)
           throws MimeException, IOException
   {
-    
+
     // TODO Auto-generated method stub
-    
+
   }
 
   @Override
   public void endBodyPart() throws MimeException
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   @Override
   public void endHeader() throws MimeException
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   @Override
   public void endMessage() throws MimeException
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   @Override
   public void endMultipart() throws MimeException
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   @Override
   public void epilogue(InputStream arg0) throws MimeException, IOException
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   @Override
   public void field(Field arg0) throws MimeException
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   @Override
   public void preamble(InputStream arg0) throws MimeException, IOException
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   @Override
   public void raw(InputStream arg0) throws MimeException, IOException
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   @Override
   public void startBodyPart() throws MimeException
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   @Override
   public void startHeader() throws MimeException
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   @Override
   public void startMessage() throws MimeException
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   @Override
   public void startMultipart(BodyDescriptor arg0) throws MimeException
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   /**
    * 
-   * @return data providers to parse each data file extracted from the mime stream.
+   * @return data providers to parse each data file extracted from the mime
+   *         stream.
    */
   public Iterable<DataProvider> getJalviewDataProviders()
   {