X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws1%2FDiscoverer.java;h=4643119d3e629d97796bca707397455a6f09310d;hb=8e45ad740239d950f7ceb8b322bf30ee307f4e98;hp=d544bea9de4da5c4f65147273767f63b467b891e;hpb=e5b2fbdb4ecc9faaadcc3e18fabad8794fca44aa;p=jalview.git diff --git a/src/jalview/ws/jws1/Discoverer.java b/src/jalview/ws/jws1/Discoverer.java index d544bea..4643119 100644 --- a/src/jalview/ws/jws1/Discoverer.java +++ b/src/jalview/ws/jws1/Discoverer.java @@ -193,28 +193,30 @@ public class Discoverer implements Runnable jalview.bin.Cache.log.debug("Setting default services"); services = new Hashtable(); // Muscle, Clustal and JPred. - ServiceHandle[] defServices = - { + ServiceHandle[] defServices = { new ServiceHandle( "MsaWS", "Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment " + "with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97.", "http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS", - MessageManager.getString("label.muscle_multiple_protein_sequence_alignment")), + MessageManager + .getString("label.muscle_multiple_protein_sequence_alignment")), new ServiceHandle( "MsaWS", "Katoh, K., K. Kuma, K., Toh, H., and Miyata, T. (2005) " + "\"MAFFT version 5: improvement in accuracy of multiple sequence alignment.\"" + " Nucleic Acids Research, 33 511-518", "http://www.compbio.dundee.ac.uk/JalviewWS/services/MafftWS", - MessageManager.getString("label.mafft_multiple_sequence_alignment")), + MessageManager + .getString("label.mafft_multiple_sequence_alignment")), new ServiceHandle( "MsaWS", "Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple" + " sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice." + " Nucleic Acids Research, 22 4673-4680", "http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS", - MessageManager.getString("label.clustalw_multiple_sequence_alignment")), + MessageManager + .getString("label.clustalw_multiple_sequence_alignment")), new ServiceHandle( "SecStrPred", "Drozdetskiy A, Cole C, Procter J & Barton GJ. (2015)\nJPred4: a protein secondary structure prediction server" @@ -253,12 +255,11 @@ public class Discoverer implements Runnable { if (jalview.gui.Desktop.desktop != null) { - JOptionPane - .showMessageDialog( - jalview.gui.Desktop.desktop, - MessageManager.getString("label.set_proxy_settings"), - MessageManager.getString("label.proxy_authorization_failed"), - JOptionPane.WARNING_MESSAGE); + JOptionPane.showMessageDialog(jalview.gui.Desktop.desktop, + MessageManager.getString("label.set_proxy_settings"), + MessageManager + .getString("label.proxy_authorization_failed"), + JOptionPane.WARNING_MESSAGE); } } else