X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws1%2FJPredClient.java;h=65847e6db6a06e2d9f80ed70fde474f5c8997295;hb=4decc3e365ce990f54773d24bb9583df48d2797a;hp=38226dcf2fc1c672d8c28d94e16327fe942bfadd;hpb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;p=jalview.git

diff --git a/src/jalview/ws/jws1/JPredClient.java b/src/jalview/ws/jws1/JPredClient.java
index 38226dc..65847e6 100644
--- a/src/jalview/ws/jws1/JPredClient.java
+++ b/src/jalview/ws/jws1/JPredClient.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -27,6 +27,7 @@ import jalview.datamodel.SeqCigar;
 import jalview.datamodel.SequenceI;
 import jalview.gui.AlignFrame;
 import jalview.gui.Desktop;
+import jalview.gui.JvOptionPane;
 import jalview.gui.WebserviceInfo;
 import jalview.util.MessageManager;
 
@@ -36,7 +37,6 @@ import java.util.Hashtable;
 
 import javax.swing.JMenu;
 import javax.swing.JMenuItem;
-import javax.swing.JOptionPane;
 
 import ext.vamsas.Jpred;
 import ext.vamsas.JpredServiceLocator;
@@ -238,7 +238,7 @@ public class JPredClient extends WS1Client
 
     SequenceI seq = msf[0];
 
-    String altitle = "JNet prediction on " + seq.getName()
+    String altitle = "JPred prediction on " + seq.getName()
             + " using alignment from " + title;
 
     wsInfo.setProgressText("Job details for MSA based prediction (" + title
@@ -275,7 +275,7 @@ public class JPredClient extends WS1Client
     wsInfo.setProgressText("Job details for prediction on sequence :\n>"
             + seq.getName() + "\n"
             + AlignSeq.extractGaps("-. ", seq.getSequenceAsString()) + "\n");
-    String altitle = "JNet prediction for sequence " + seq.getName()
+    String altitle = "JPred prediction for sequence " + seq.getName()
             + " from " + title;
 
     Hashtable SequenceInfo = jalview.analysis.SeqsetUtils
@@ -323,7 +323,7 @@ public class JPredClient extends WS1Client
 
     } catch (Exception ex)
     {
-      JOptionPane
+      JvOptionPane
               .showMessageDialog(
                       Desktop.desktop,
                       MessageManager
@@ -332,7 +332,7 @@ public class JPredClient extends WS1Client
                                       new String[] { WebServiceName, WsURL }),
                       MessageManager
                               .getString("label.internal_jalview_error"),
-                      JOptionPane.WARNING_MESSAGE);
+                      JvOptionPane.WARNING_MESSAGE);
       wsInfo.setProgressText(MessageManager
               .formatMessage(
                       "label.secondary_structure_prediction_service_couldnt_be_located",
@@ -345,6 +345,7 @@ public class JPredClient extends WS1Client
     return server;
   }
 
+  @Override
   public void attachWSMenuEntry(JMenu wsmenu, final ServiceHandle sh,
           final AlignFrame af)
   {
@@ -352,6 +353,7 @@ public class JPredClient extends WS1Client
     method.setToolTipText(sh.getEndpointURL());
     method.addActionListener(new ActionListener()
     {
+      @Override
       public void actionPerformed(ActionEvent e)
       {
         AlignmentView msa = af.gatherSeqOrMsaForSecStrPrediction();