X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws1%2FJPredThread.java;h=4e95b14c8bb3dbef5a5a253492dbc6b3e91da814;hb=f89e9db5a8160c422e0c16f009294a8e1fa458d5;hp=72274de5071effd17232818cd38e854358e8bfce;hpb=4b31a57dbc12d26b92c31186ff3b953f0dd8dfcc;p=jalview.git

diff --git a/src/jalview/ws/jws1/JPredThread.java b/src/jalview/ws/jws1/JPredThread.java
index 72274de..4e95b14 100644
--- a/src/jalview/ws/jws1/JPredThread.java
+++ b/src/jalview/ws/jws1/JPredThread.java
@@ -231,7 +231,8 @@ class JPredThread extends JWS1Thread implements WSClientI
         if (alant.sequenceRef != null)
         {
           replaceAnnotationOnAlignmentWith(alant, alant.label,
-                  "jalview.jws1.Jpred", alant.sequenceRef);
+                  "jalview.jws1.Jpred" + (this.msa == null ? "" : "MSA"),
+                  alant.sequenceRef);
         }
       }
       return new Object[]