X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws1%2FMsaWSClient.java;h=bb0e43d3dc23e56ef8bb7baab6c4c03bc2ed0364;hb=304e64fb34b32659be1bbfd39fb4e15b2f79586e;hp=4a096259d3bc2c0fa057e8dfff4532cc7e0d1e41;hpb=f4766a7bbcfae845fc95923b01fa14ff83d589ff;p=jalview.git

diff --git a/src/jalview/ws/jws1/MsaWSClient.java b/src/jalview/ws/jws1/MsaWSClient.java
index 4a09625..bb0e43d 100644
--- a/src/jalview/ws/jws1/MsaWSClient.java
+++ b/src/jalview/ws/jws1/MsaWSClient.java
@@ -20,6 +20,8 @@
  */
 package jalview.ws.jws1;
 
+import java.util.Locale;
+
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.AlignmentView;
 import jalview.gui.AlignFrame;
@@ -51,8 +53,6 @@ public class MsaWSClient extends WS1Client
    */
   ext.vamsas.MuscleWS server;
 
-  AlignFrame alignFrame;
-
   /**
    * Creates a new MsaWSClient object that uses a service given by an externally
    * retrieved ServiceHandle
@@ -78,7 +78,7 @@ public class MsaWSClient extends WS1Client
     alignFrame = _alignFrame;
     if (!sh.getAbstractName().equals("MsaWS"))
     {
-      JvOptionPane.showMessageDialog(Desktop.desktop,
+      JvOptionPane.showMessageDialog(Desktop.getDesktopPane(),
               MessageManager.formatMessage(
                       "label.service_called_is_not_msa_service",
                       new String[]
@@ -91,7 +91,7 @@ public class MsaWSClient extends WS1Client
 
     if ((wsInfo = setWebService(sh)) == null)
     {
-      JvOptionPane.showMessageDialog(Desktop.desktop, MessageManager
+      JvOptionPane.showMessageDialog(Desktop.getDesktopPane(), MessageManager
               .formatMessage("label.msa_service_is_unknown", new String[]
               { sh.getName() }),
               MessageManager.getString("label.internal_jalview_error"),
@@ -119,7 +119,7 @@ public class MsaWSClient extends WS1Client
 
     wsInfo.setProgressText(((submitGaps) ? "Re-alignment" : "Alignment")
             + " of " + altitle + "\nJob details\n");
-    String jobtitle = WebServiceName.toLowerCase();
+    String jobtitle = WebServiceName.toLowerCase(Locale.ROOT);
     if (jobtitle.endsWith("alignment"))
     {
       if (submitGaps && (!jobtitle.endsWith("realignment")