X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws1%2FMsaWSThread.java;h=72d41c945532c1baea49d9108b50002cafb3adb5;hb=2d137c4d89286572fba9e1f81eee9b35e4ca4a97;hp=e4247f7eca92ce1568123f96752dde6e6d6bef7f;hpb=853624fb32058cccc544ae7d13af6ad4b0800b6c;p=jalview.git diff --git a/src/jalview/ws/jws1/MsaWSThread.java b/src/jalview/ws/jws1/MsaWSThread.java index e4247f7..72d41c9 100644 --- a/src/jalview/ws/jws1/MsaWSThread.java +++ b/src/jalview/ws/jws1/MsaWSThread.java @@ -26,7 +26,7 @@ import jalview.datamodel.Alignment; import jalview.datamodel.AlignmentI; import jalview.datamodel.AlignmentOrder; import jalview.datamodel.AlignmentView; -import jalview.datamodel.ColumnSelection; +import jalview.datamodel.HiddenColumns; import jalview.datamodel.SequenceI; import jalview.gui.AlignFrame; import jalview.gui.Desktop; @@ -632,7 +632,7 @@ class MsaWSThread extends JWS1Thread implements WSClientI orders[j] = null; } SequenceI[] alignment = (SequenceI[]) newview[0]; - ColumnSelection columnselection = (ColumnSelection) newview[1]; + HiddenColumns hidden = (HiddenColumns) newview[1]; Alignment al = new Alignment(alignment); // TODO: add 'provenance' property to alignment from the method notes // accompanying each subjob @@ -646,7 +646,7 @@ class MsaWSThread extends JWS1Thread implements WSClientI if (newFrame) { - AlignFrame af = new AlignFrame(al, columnselection, + AlignFrame af = new AlignFrame(al, hidden, AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT); // initialise with same renderer settings as in parent alignframe.