X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws1%2FSeqSearchWSClient.java;h=04fb4b97ad03e0a9c721f64316b543438edff1cf;hb=ab58313e7bb31264ddb2715a1c548cdc789d7fa6;hp=53338d314b6ea11c5026e7518230c64256d70f8a;hpb=f4766a7bbcfae845fc95923b01fa14ff83d589ff;p=jalview.git

diff --git a/src/jalview/ws/jws1/SeqSearchWSClient.java b/src/jalview/ws/jws1/SeqSearchWSClient.java
index 53338d3..04fb4b9 100644
--- a/src/jalview/ws/jws1/SeqSearchWSClient.java
+++ b/src/jalview/ws/jws1/SeqSearchWSClient.java
@@ -20,6 +20,7 @@
  */
 package jalview.ws.jws1;
 
+import jalview.bin.Console;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.AlignmentView;
 import jalview.gui.AlignFrame;
@@ -56,8 +57,6 @@ public class SeqSearchWSClient extends WS1Client
    */
   ext.vamsas.SeqSearchI server;
 
-  AlignFrame alignFrame;
-
   /**
    * Creates a new MsaWSClient object that uses a service given by an externally
    * retrieved ServiceHandle
@@ -84,7 +83,7 @@ public class SeqSearchWSClient extends WS1Client
     // name to service client name
     if (!sh.getAbstractName().equals(this.getServiceActionKey()))
     {
-      JvOptionPane.showMessageDialog(Desktop.desktop,
+      JvOptionPane.showMessageDialog(Desktop.getDesktopPane(),
               MessageManager.formatMessage(
                       "label.service_called_is_not_seq_search_service",
                       new String[]
@@ -97,7 +96,7 @@ public class SeqSearchWSClient extends WS1Client
 
     if ((wsInfo = setWebService(sh)) == null)
     {
-      JvOptionPane.showMessageDialog(Desktop.desktop,
+      JvOptionPane.showMessageDialog(Desktop.getDesktopPane(),
               MessageManager.formatMessage(
                       "label.seq_search_service_is_unknown", new String[]
                       { sh.getName() }),
@@ -272,7 +271,7 @@ public class SeqSearchWSClient extends WS1Client
               .getSupportedDatabases();
     } catch (Exception e)
     {
-      jalview.bin.Cache.log.warn(
+      Console.warn(
               "Database list request failed, so disabling SeqSearch Service client "
                       + sh.getName() + " at " + sh.getEndpointURL(),
               e);