X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws2%2FAAConClient.java;h=3594aa42ab3277c3231dd0d7fc333fb54344c7b2;hb=4decc3e365ce990f54773d24bb9583df48d2797a;hp=66338b12655814d15b4dc7fa8c0924a69bf37f2e;hpb=2b8cf92a2483d206d9e574bbe8306ad845a308d8;p=jalview.git

diff --git a/src/jalview/ws/jws2/AAConClient.java b/src/jalview/ws/jws2/AAConClient.java
index 66338b1..3594aa4 100644
--- a/src/jalview/ws/jws2/AAConClient.java
+++ b/src/jalview/ws/jws2/AAConClient.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -22,8 +22,7 @@ package jalview.ws.jws2;
 
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.gui.AlignFrame;
-import jalview.gui.AlignmentPanel;
-import jalview.ws.jws2.dm.AAConSettings;
+import jalview.util.MessageManager;
 import jalview.ws.jws2.jabaws2.Jws2Instance;
 import jalview.ws.params.WsParamSetI;
 import jalview.ws.uimodel.AlignAnalysisUIText;
@@ -49,6 +48,7 @@ public class AAConClient extends JabawsCalcWorker
     alignedSeqs = true;
     nucleotidesAllowed = false;
     proteinAllowed = true;
+    filterNonStandardResidues = true;
     gapMap = new boolean[0];
     initViewportParams();
   }
@@ -121,9 +121,9 @@ public class AAConClient extends JabawsCalcWorker
     return new AlignAnalysisUIText(
             compbio.ws.client.Services.AAConWS.toString(),
             jalview.ws.jws2.AAConClient.class, CALC_ID, false, true, true,
-            "AACon Calculations",
-            "When checked, AACon calculations are updated automatically.",
-            "Change AACon Settings...",
-            "Modify settings for AACon calculations.");
+            MessageManager.getString("label.aacon_calculations"),
+            MessageManager.getString("tooltip.aacon_calculations"),
+            MessageManager.getString("label.aacon_settings"),
+            MessageManager.getString("tooltip.aacon_settings"));
   }
 }