X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws2%2FAAConClient.java;h=3594aa42ab3277c3231dd0d7fc333fb54344c7b2;hb=4decc3e365ce990f54773d24bb9583df48d2797a;hp=b9abb8499c30987c1e19d2a1b8e8e3ea0176da86;hpb=5ae23fd6e3c36ad7e735b514b6caf901be996c5e;p=jalview.git

diff --git a/src/jalview/ws/jws2/AAConClient.java b/src/jalview/ws/jws2/AAConClient.java
index b9abb84..3594aa4 100644
--- a/src/jalview/ws/jws2/AAConClient.java
+++ b/src/jalview/ws/jws2/AAConClient.java
@@ -48,6 +48,7 @@ public class AAConClient extends JabawsCalcWorker
     alignedSeqs = true;
     nucleotidesAllowed = false;
     proteinAllowed = true;
+    filterNonStandardResidues = true;
     gapMap = new boolean[0];
     initViewportParams();
   }