X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws2%2FAAConClient.java;h=aba9222b4a08c3cc2f2f1af067333786be0e98d0;hb=55a3fa00d81fe3156c55d4748eabfadeb25a97ed;hp=166edff03d122719995140b9c8c7126c12f51cd3;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git

diff --git a/src/jalview/ws/jws2/AAConClient.java b/src/jalview/ws/jws2/AAConClient.java
index 166edff..aba9222 100644
--- a/src/jalview/ws/jws2/AAConClient.java
+++ b/src/jalview/ws/jws2/AAConClient.java
@@ -1,5 +1,5 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
@@ -24,6 +24,7 @@ import jalview.gui.AlignmentPanel;
 import jalview.ws.jws2.dm.AAConSettings;
 import jalview.ws.jws2.jabaws2.Jws2Instance;
 import jalview.ws.params.WsParamSetI;
+import jalview.ws.uimodel.AlignAnalysisUIText;
 
 import java.util.ArrayList;
 import java.util.List;
@@ -49,23 +50,6 @@ public class AAConClient extends JabawsAlignCalcWorker
     initViewportParams();
   }
 
-  protected void initViewportParams()
-  {
-    ((jalview.gui.AlignViewport) alignViewport).setCalcIdSettingsFor(
-            getCalcId(),
-            new AAConSettings(true, service, this.preset,
-                    (arguments != null) ? JabaParamStore
-                            .getJwsArgsfromJaba(arguments) : null), true);
-  }
-
-  @Override
-  public void updateParameters(WsParamSetI newpreset,
-          java.util.List<Argument> newarguments)
-  {
-    super.updateParameters(newpreset, newarguments);
-    initViewportParams();
-  };
-
   public String getServiceActionText()
   {
     return "calculating Amino acid consensus using AACon service";
@@ -115,17 +99,21 @@ public class AAConClient extends JabawsAlignCalcWorker
     }
   }
 
+  @Override
   public String getCalcId()
   {
-    return SequenceAnnotationWSClient.AAConCalcId;
+    return CALC_ID;
   }
+  private static String CALC_ID="jabaws2.AACon";
 
-  public static void removeAAConsAnnotation(AlignmentPanel alignPanel)
+  public static AlignAnalysisUIText getAlignAnalysisUITest()
   {
-    for (AlignmentAnnotation aa : alignPanel.getAlignment().findAnnotation(
-            SequenceAnnotationWSClient.AAConCalcId))
-    {
-      alignPanel.getAlignment().deleteAnnotation(aa);
-    }
+    return new AlignAnalysisUIText(
+            compbio.ws.client.Services.AAConWS.toString(),
+            jalview.ws.jws2.AAConClient.class, CALC_ID, false, true, true,
+            "AACon Calculations",
+            "When checked, AACon calculations are updated automatically.",
+            "Change AACon Settings...",
+            "Modify settings for AACon calculations.");
   }
 }