X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws2%2FAADisorderClient.java;h=0c70d403508586e7afad2ddaeae077120c32ef14;hb=25aaaa87042b3f507ad4348120df7dd073182759;hp=83eebdfa574e61d79ea7aefbb145b5cc161f2044;hpb=2b8cf92a2483d206d9e574bbe8306ad845a308d8;p=jalview.git diff --git a/src/jalview/ws/jws2/AADisorderClient.java b/src/jalview/ws/jws2/AADisorderClient.java index 83eebdf..0c70d40 100644 --- a/src/jalview/ws/jws2/AADisorderClient.java +++ b/src/jalview/ws/jws2/AADisorderClient.java @@ -1,5 +1,5 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. @@ -279,10 +279,13 @@ public class AADisorderClient extends JabawsCalcWorker implements { continue; } + String typename, calcName; AlignmentAnnotation annot = createAnnotationRowsForScores( ourAnnot, - service.serviceType + " (" + scr.getMethod() + ")", - service.getServiceTypeURI() + "/" + scr.getMethod(), + typename = service.serviceType + " (" + + scr.getMethod() + ")", + calcName = service.getServiceTypeURI() + "/" + + scr.getMethod(), aseq, base + 1, scr); annot.graph = AlignmentAnnotation.LINE_GRAPH; @@ -333,6 +336,9 @@ public class AADisorderClient extends JabawsCalcWorker implements } } annot._linecolour = col; + // finally, update any dataset annotation + replaceAnnotationOnAlignmentWith(annot, typename, calcName, + aseq); } } } @@ -345,7 +351,7 @@ public class AADisorderClient extends JabawsCalcWorker implements { if (dispFeatures) { - jalview.gui.FeatureRenderer fr = ((jalview.gui.AlignmentPanel) ap) + jalview.api.FeatureRenderer fr = ((jalview.gui.AlignmentPanel) ap) .cloneFeatureRenderer(); for (String ft : fc.keySet()) {