X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws2%2FAADisorderClient.java;h=a70689648c5399bb0a8df83de6d7e649b4b2634c;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=887a5d93e20f049a5177edf76e4be5da74b79f1b;hpb=a1984b1c8c273ed33c7ce9283039f4027dcae2de;p=jalview.git

diff --git a/src/jalview/ws/jws2/AADisorderClient.java b/src/jalview/ws/jws2/AADisorderClient.java
index 887a5d9..a706896 100644
--- a/src/jalview/ws/jws2/AADisorderClient.java
+++ b/src/jalview/ws/jws2/AADisorderClient.java
@@ -21,7 +21,7 @@
 package jalview.ws.jws2;
 
 import jalview.api.FeatureColourI;
-import jalview.bin.Cache;
+import jalview.bin.Console;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.GraphLine;
 import jalview.datamodel.SequenceFeature;
@@ -207,10 +207,9 @@ public class AADisorderClient extends JabawsCalcWorker
           scores = scoremanager.getAnnotationForSequence(seqId);
         } catch (Exception q)
         {
-          Cache.info("Couldn't recover disorder prediction for sequence "
-                          + seq.getName() + "(Prediction name was " + seqId
-                          + ")"
-                          + "\nSee http://issues.jalview.org/browse/JAL-1319 for one possible reason why disorder predictions might fail.");
+          Console.info("Couldn't recover disorder prediction for sequence "
+                  + seq.getName() + "(Prediction name was " + seqId + ")"
+                  + "\nSee http://issues.jalview.org/browse/JAL-1319 for one possible reason why disorder predictions might fail.");
         }
         float last = Float.NaN, val = Float.NaN;
         int lastAnnot = ourAnnot.size();
@@ -238,13 +237,13 @@ public class AADisorderClient extends JabawsCalcWorker
                 if (vals.hasNext())
                 {
                   val = vals.next().floatValue();
-                  sf = new SequenceFeature(type[0], type[1],
-                          base + rn.from, base + rn.to, val, methodName);
+                  sf = new SequenceFeature(type[0], type[1], base + rn.from,
+                          base + rn.to, val, methodName);
                 }
                 else
                 {
-                  sf = new SequenceFeature(type[0], type[1],
-                          base + rn.from, base + rn.to, methodName);
+                  sf = new SequenceFeature(type[0], type[1], base + rn.from,
+                          base + rn.to, methodName);
                 }
                 dseq.addSequenceFeature(sf);
                 if (last != val && !Float.isNaN(last))