X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws2%2FAbstractJabaCalcWorker.java;h=5b3a69a6982d38cdcbe4b162920fa5fcecada8a6;hb=a1984b1c8c273ed33c7ce9283039f4027dcae2de;hp=26fe0a20ce215c830d6559ce064abc5036202fba;hpb=3d0101179759ef157b088ea135423cd909512d9f;p=jalview.git

diff --git a/src/jalview/ws/jws2/AbstractJabaCalcWorker.java b/src/jalview/ws/jws2/AbstractJabaCalcWorker.java
index 26fe0a2..5b3a69a 100644
--- a/src/jalview/ws/jws2/AbstractJabaCalcWorker.java
+++ b/src/jalview/ws/jws2/AbstractJabaCalcWorker.java
@@ -24,12 +24,14 @@ import jalview.analysis.AlignSeq;
 import jalview.analysis.SeqsetUtils;
 import jalview.api.AlignViewportI;
 import jalview.api.AlignmentViewPanel;
+import jalview.bin.Cache;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.AnnotatedCollectionI;
 import jalview.datamodel.SequenceI;
 import jalview.gui.AlignFrame;
 import jalview.gui.IProgressIndicator;
+import jalview.gui.IProgressIndicatorHandler;
 import jalview.schemes.ResidueProperties;
 import jalview.workers.AlignCalcWorker;
 import jalview.ws.jws2.dm.AAConSettings;
@@ -220,7 +222,26 @@ public abstract class AbstractJabaCalcWorker extends AlignCalcWorker
                 progressId = System.currentTimeMillis());
       }
       rslt = submitToService(seqs);
+      if (guiProgress != null)
+      {
+        guiProgress.registerHandler(progressId,
+                new IProgressIndicatorHandler()
+                {
 
+                  @Override
+                  public boolean cancelActivity(long id)
+                  {
+                    cancelCurrentJob();
+                    return true;
+                  }
+
+                  @Override
+                  public boolean canCancel()
+                  {
+                    return true;
+                  }
+                });
+      }
       boolean finished = false;
       long rpos = 0;
       do
@@ -324,7 +345,7 @@ public abstract class AbstractJabaCalcWorker extends AlignCalcWorker
         }
         if (collectAnnotationResultsFor(rslt))
         {
-          jalview.bin.Cache.log.debug("Updating result annotation from Job "
+          Cache.debug("Updating result annotation from Job "
                   + rslt + " at " + service.getUri());
           updateResultAnnotation(true);
           ap.adjustAnnotationHeight();
@@ -372,7 +393,8 @@ public abstract class AbstractJabaCalcWorker extends AlignCalcWorker
         {
           guiProgress.setProgressBar("", progressId);
         }
-        ap.paintAlignment(true);
+        // TODO: may not need to paintAlignment again !
+        ap.paintAlignment(false, false);
       }
       if (msg.length() > 0)
       {
@@ -582,7 +604,7 @@ public abstract class AbstractJabaCalcWorker extends AlignCalcWorker
   protected boolean checkDone()
   {
     calcMan.notifyStart(this);
-    ap.paintAlignment(false);
+    ap.paintAlignment(false, false);
     while (!calcMan.notifyWorking(this))
     {
       if (calcMan.isWorking(this))
@@ -593,7 +615,7 @@ public abstract class AbstractJabaCalcWorker extends AlignCalcWorker
       {
         if (ap != null)
         {
-          ap.paintAlignment(false);
+          ap.paintAlignment(false, false);
         }
 
         Thread.sleep(200);