X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fjws2%2FJabaWsServerQuery.java;h=2eb484b7056eeaa1ca694bec122ab78283fa771c;hb=7e8241cdc284ef2586e36a3abbe3bd385dad10dc;hp=73d5654b1efc38daf39fd763df5a27b86e591d09;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git

diff --git a/src/jalview/ws/jws2/JabaWsServerQuery.java b/src/jalview/ws/jws2/JabaWsServerQuery.java
index 73d5654..2eb484b 100644
--- a/src/jalview/ws/jws2/JabaWsServerQuery.java
+++ b/src/jalview/ws/jws2/JabaWsServerQuery.java
@@ -1,19 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 /**
  * 
@@ -22,6 +25,7 @@ package jalview.ws.jws2;
 
 import jalview.bin.Cache;
 import jalview.ws.jws2.jabaws2.Jws2Instance;
+import jalview.ws.jws2.jabaws2.Jws2InstanceFactory;
 
 import java.util.HashSet;
 import java.util.Set;
@@ -75,7 +79,7 @@ public class JabaWsServerQuery implements Runnable
   { Services.ClustalWS, Services.MuscleWS, Services.MafftWS,
       Services.ProbconsWS, Services.TcoffeeWS, Services.AAConWS,
       Services.DisemblWS, Services.GlobPlotWS, Services.IUPredWS,
-      Services.JronnWS };
+      Services.JronnWS, Services.RNAalifoldWS };
 
   /*
    * (non-Javadoc)
@@ -115,8 +119,17 @@ public class JabaWsServerQuery implements Runnable
 
             jabasws2 = true;
             srv_set = registry.getSupportedServices();
+
+            // dan test
+            System.out.println("registry.getSupportedServices: "
+                    + srv_set.toString());
+
             svccategories = registry.getServiceCategories();
 
+            // dan test
+            // System.out.println("registry.getServiceCategories: " +
+            // svccategories.toString());
+
           }
         } catch (Exception ex)
         {
@@ -170,13 +183,14 @@ public class JabaWsServerQuery implements Runnable
 
                 String description = registry.getServiceDescription(srv);
 
-                svc = new Jws2Instance(jwsservers, srv.toString(),
-                        cat.name, description, service);
+                svc = Jws2InstanceFactory.newJws2Instance(jwsservers,
+                        srv.toString(), cat.name, description, service);
               }
               if (svc == null)
               {
-                svc = new Jws2Instance(jwsservers, srv.toString(),
-                        cat.name, "JABAWS 1 Alignment Service", service);
+                svc = Jws2InstanceFactory.newJws2Instance(jwsservers,
+                        srv.toString(), cat.name,
+                        "JABAWS 1 Alignment Service", service);
               }
               jws2Discoverer.addService(jwsservers, svc);
             }